Observatorio de I+D+i UPM

Memorias de investigación
Research Publications in journals:
RDFBuilder: A tool to automatically build RDF-based interfaces for MAGE-OM microarray data sources
Year:2013
Research Areas
  • Information technology and adata processing
Information
Abstract
This paper presents RDFBuilder, a tool that enables RDF-based access to MAGE-ML-compliant microarray databases. We have developed a system that automatically transforms the MAGE-OM model and microarray data stored in the ArrayExpress database into RDF format. Additionally, the system automatically enables a SPARQL endpoint. This allows users to execute SPARQL queries for retrieving microarray data, either from specific experiments or from more than one experiment at a time. Our system optimizes response times by caching and reusing information from previous queries. In this paper, we describe our methods for achieving this transformation. We show that our approach is complementary to other existing initiatives, such as Bio2RDF, for accessing and retrieving data from the ArrayExpress database.
International
Si
JCR
Si
Title
COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE
ISBN
0169-2607
Impact factor JCR
1,516
Impact info
Volume
111
10.1016/j.cmpb.2013.04.009
Journal number
1
From page
220
To page
227
Month
SIN MES
Ranking
0
Participants
  • Autor: Alberto Anguita Sanchez (UPM)
  • Autor: Luis Martín Martín
  • Autor: Miguel Garcia Remesal (UPM)
  • Autor: Victor Manuel Maojo Garcia (UPM)
Research Group, Departaments and Institutes related
  • Creador: Grupo de Investigación: Grupo de Informática Biomédica (GIB)
  • Departamento: Inteligencia Artificial
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Cofinanciación del MINECO en el marco del Programa INNCIDE 2011 (OTR-2011-0236)
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