Observatorio de I+D+i UPM

Memorias de investigación
Ponencias en congresos:
Comparative genomics of lupin rhizobial symbionts
Año:2015
Áreas de investigación
  • Ciencias naturales y ciencias de la salud
Datos
Descripción
Native bradyrhizobial symbionts of lupins thriving in the Iberian Peninsula were studied. The analysis included five species that preferred neutral or acid soils: L. angustifolius, L. luteus, L. hispanicus, L. micranthus and L. cosentinii, and the unique, recently described lupin species L. mariae-josephae, endemic of alkaline Chromic Luvisol soils (?terra rossa?) in Eastern Spain. Draft genome sequences of at least one strain from each lupin species were obtained by Illumina (PE, 2x300 bp, MySeq v. 3.0) sequencing, assembled with SPAdes, and annotated with the RAST server. Pairwise Average Nucleotide Identities (ANI) between genomes were calculated using JSpecies. The results showed a clear separation between strains nodulating L. mariae-josephae and those that nodulate lupins from acid soils. These results are in agreement with the observed host specificity, i. e. bradyrhizobia from L. mariae-josephae don?t nodulate most of the lupins from acid soils and any bradyrhizobia from acid soil lupins do nodulate, although inefficiently, L. mariae-josephae. In contrast, acid soil lupins are efficiently nodulated by bradyrhizobia isolated from any of these lupins. Consistent with this, comparison of symbiotic regions (nod, fix, nif genes), showed maximum differences between L. mariae-josephae strains and those from other lupins. Another genomic features were also compared and results will be discussed.
Internacional
Si
Nombre congreso
14th International Lupin Conference
Tipo de participación
960
Lugar del congreso
Milán (Italia)
Revisores
Si
ISBN o ISSN
0000000000
DOI
Fecha inicio congreso
21/06/2015
Fecha fin congreso
26/06/2015
Desde la página
144
Hasta la página
144
Título de las actas
14th International Lupin Conference
Esta actividad pertenece a memorias de investigación
Participantes
  • Autor: Luis Rey Navarro (UPM)
  • Autor: David Ricardo Duran Wendt (UPM)
  • Autor: Tomas-Andres Ruiz Argueso (UPM)
  • Autor: Juan Imperial Ródenas (UPM)
Grupos de investigación, Departamentos, Centros e Institutos de I+D+i relacionados
  • Creador: Grupo de Investigación: BIOLOGÍA MOLECULAR Y COMPUTACIONAL
  • Centro o Instituto I+D+i: Centro de Biotecnología y Genómica de Plantas, CBGP
  • Departamento: Biotecnología - Biología Vegetal
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