Observatorio de I+D+i UPM

Descripción
Most biologists can easily access NGS technologies and data in order to characterize the microbial diversity of a sample with 16S rDNA amplicon sequencing. However, the output of this kind of experiment can be challenging to handle. We assessed the different options to address 16S rDNA amplicon data analysis in Galaxy, and will highlight the benefits and drawbacks of the existing solutions. Indeed, even if the bioinformatics community now provides numerous tools allowing treatment of this sort of data, determining which software best fits the user?s needs is not trivial. The choice of the software and the algorithms one should use is important, as it will impact the output of the experiment and relies on the characteristics of the data and the user experience. Here we present the different existing solutions to analyze 16S rDNA amplicon sequencing data inside Galaxy.
Internacional	Si
Nombre congreso	2015 Galaxy Community Conference (GCC2015)
Tipo de participación	970
Lugar del congreso	Norwick (Reino Unido)
Revisores	Si
ISBN o ISSN	0000000000
DOI
Fecha inicio congreso	06/07/2015
Fecha fin congreso	08/07/2015
Desde la página	7
Hasta la página	7
Título de las actas	2015 Galaxy Community Conference (GCC2015)

Esta actividad pertenece a memorias de investigación

• Autor: Loic Bourgeois (UPM)
• Autor: Amalia Soenens Martínez de Murguia (UPM)
• Autor: Nuria Lozano Garcia (UPM)
• Autor: Juan Imperial Ródenas (UPM)

• Creador: Grupo de Investigación: BIOLOGÍA MOLECULAR Y COMPUTACIONAL
• Centro o Instituto I+D+i: Centro de Biotecnología y Genómica de Plantas, CBGP
• Departamento: Lenguajes y Sistemas Informáticos e Ingeniería de Software