Observatorio de I+D+i UPM

Memorias de investigación
Artículos en revistas:
When Transcriptomics and Metabolomics Work Hand in Hand: A Case Study Characterizing Plant CDF Transcription Factors
Año:2018
Áreas de investigación
  • Biología molecular, celular y genética
Datos
Descripción
Over the last three decades, novel ?omics? platform technologies for the sequencing of DNA and complementary DNA (cDNA) (RNA-Seq), as well as for the analysis of proteins and metabolites by mass spectrometry, have become more and more available and increasingly found their way into general laboratory life. With this, the ability to generate highly multivariate datasets on the biological systems of choice has increased tremendously. However, the processing and, perhaps even more importantly, the integration of ?omics? datasets still remains a bottleneck, although considerable computational and algorithmic advances have been made in recent years. In this mini-review, we use a number of recent ?multi-omics? approaches realized in our laboratories as a common theme to discuss possible pitfalls of applying ?omics? approaches and to highlight some useful tools for data integration and visualization in the form of an exemplified case study. In the selected example, we used a combination of transcriptomics and metabolomics alongside phenotypic analyses to functionally characterize a small number of Cycling Dof Transcription Factors (CDFs). It has to be remarked that, even though this approach is broadly used, the given workflow is only one of plenty possible ways to characterize target proteins.
Internacional
Si
JCR del ISI
No
Título de la revista
High-Throughput
ISSN
2571-5135
Factor de impacto JCR
Información de impacto
Volumen
7
DOI
10.3390/ht7010007
Número de revista
1
Desde la página
7
Hasta la página
7
Mes
FEBRERO
Ranking
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Participantes
  • Autor: Marta Marina Perez Alonso (UPM)
  • Autor: Víctor Carrasco Loba (UPM)
  • Autor: Joaquin Medina Alcazar (UPM)
  • Autor: Jesus Vicente Carbajosa (UPM)
  • Autor: Stephan Pollmann (UPM)
Grupos de investigación, Departamentos, Centros e Institutos de I+D+i relacionados
  • Creador: Centro o Instituto I+D+i: Centro de Biotecnología y Genómica de Plantas, CBGP
  • Departamento: Biotecnología - Biología Vegetal
S2i 2023 Observatorio de investigación @ UPM con la colaboración del Consejo Social UPM
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