Observatorio de I+D+i UPM
• ESPAÑOL
• ENGLISH
INVESTIGADORES
ESTRUCTURAS DE I+D+I
ACTIVIDAD INVESTIGADORA
INNOVACIÓN
Investigador
Mark Denis Wilkinson
Categoría Investigador
L.D. INVESTIGADOR SENIOR (Isaac Peral)
Escuela UPM
CENTRO DE BIOTEC. Y GENOMICA DE PLANTAS
Departamento:
BIOTECNOLOGÍA - BIOLOGÍA VEGETAL
Centros/Institutos I+D+i
CENTRO DE BIOTEC. Y GENOMICA DE PLANTAS
Area Conocimiento
SIN AREA DE CONOCIMIENTO
Grupo de Investigación:
Abordajes Multidisciplinares en la Interfaz Planta-Microorganismo
Email (Directorio UPM)
mark.wilkinson
upm.es
Teléfono (Directorio UPM)
910679196
Datos de Memorias relacionados
Proyectos de I+D+i y generación de recursos
7 Proyectos de I+D+i
1: (2012)
Programa Isaac Peral - Bioninformática
2: (2015)
PlantFrontiers: Nuevas fronteras de la biología de plantas
3: (2015)
QTPIE: Calidad y Confianza de Procedencia en e-Ciencia
4: (2018)
EMMA: Aclaración de los mecanismos moleculares conectando el nudo AMI1 con el equilibrio entre crecimiento y defensa
5: (2018)
SUBPROGRAMA ESTATAL DE FORTALECIMIENTO INSTITUCIONAL. CENTROS DE EXCELENCIA SEVERO OCHOA Y UNIDADES DE EXCELENCIA MARÍA DE MAEZTU
6: (2019)
EJP RD: European Joint Programme on Rare Diseases
7: (2019)
PERFORM TRAINING MODULES ON FAIR DATA STEWARDSHIP COURSES OFFERED BY PHORTOS
Formación de Investigadores y Movilidad
1 Estancias y sabáticos recogidos en programas oficiales
1: (2017)
Estancia de Mario Prieto en Dutch Techcentre for Life Sciences
3 Tesis Doctorales
1: (2016)
FAIR approaches applied to unraveling Plant-Pathogen Interactions Data and RNA Processing Evolution
2: (2017)
Bioinformatic approaches to understand RNA biology in the rice blast fungus
3: (2019)
Detection and formal classification of certainty and its application to text mining of chains of scholarly statements
Difusión de Resultados de Investigación
24 Artículos en revistas
1: (2012)
Analysis of a Multilevel Diagnosis Decision Support System and Its Implications: A Case Study
2: (2013)
OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows
3: (2013)
The Emergent Discipline of Health Web Science
4: (2013)
The SADI Personal Health Lens: A Web Browser-Based System for Identifying Personally Relevant Drug Interactions
5: (2013)
The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies
6: (2014)
The relationship between host lifespan and pathogen reservoir potential: An analysis in the system Arabidopsis thaliana-Cucumber mosaic virus
7: (2015)
Enhanced reproducibility of SADI web service workflows with Galaxy and Docke
8: (2015)
Enhanced reproducibility of SADI web service workflows with Galaxy and Docker
9: (2015)
Extracting Diagnostic Knowledge from MedLine Plus: a Comparison between MetaMap and cTAKES Approaches
10: (2015)
Extracting Diagnostic Knowledge from MedLine Plus: a Comparison between MetaMap and cTAKES Approaches
11: (2015)
Quantitative evaluation of bias in PCR amplification and next-generation sequencing derived from metabarcoding samples
12: (2015)
VPS13D Gene Variant Is Associated with Altered IL-6 Production and Mortality in Septic Shock
13: (2016)
Molecular characterization of a novel ssRNA ourmia-like virus from the rice blast fungus Magnaporthe oryzae
14: (2016)
Publishing FAIR Data: An Exemplar Methodology Utilizing PHI-Base
15: (2016)
Publishing FAIR Data: an exemplar methodology utilizing PHI-base. Frontiers in Plant Science
16: (2016)
The FAIR Guiding Principles for scientific data management and stewardship
17: (2017)
Cloudy, increasingly FAIR; revisiting the FAIR Data guiding principles for the European Open Science Cloud
18: (2017)
Interoperability and FAIRness through a novel combination of Web technologies
19: (2017)
Interoperability and FAIRness through a novel combination of Web technologies
20: (2018)
A Design Framework and Exemplar Metrics for FAIRness
21: (2018)
MDPbiome: Microbiome Engineering through Prescriptive Perturbations
22: (2018)
MECP2 variation in Rett syndrome-An overview of current coverage of genetic and phenotype data within existing databases
23: (2018)
Virulence- and Signaling-Associated Genes Display a Preference for Long 3' UTRs during Rice Infection and Metabolic Stress in the Rice Blast Fungus
24: (2019)
Evaluating FAIR maturity through a scalable, automated, community- governed framework
9 Capítulos de libros
1: (2012)
Genomics Data Resources: Frameworks and Standards
2: (2012)
Leveraging Applications of Formal Methods, Verification and Validation. Applications and Case Studies
3: (2012)
OWL-DL Domain-Models as Abstract Workflows
4: (2014)
Bioinformatics tools for Next-Generation RNA sequencing analysis
5: (2015)
Diagnostic Knowledge Extraction from MedlinePlus: An Application for Infectious Diseases
6: (2015)
Diagnostic Knowledge Extraction from MedlinePlus: An Application for Infectious Diseases
7: (2015)
Diagnostic Knowledge Extraction from MedlinePlus: An Application for Infectious Diseases
8: (2016)
FAIR Data Points Supporting Big Data Interoperabilit
9: (2017)
Preparing Data at the Source to Foster Interoperability across Rare Disease Resources
9 Conferencias invitadas en congresos
1: (2012)
A data-driven approach to automatic discovery of prescription drugs in cardiovascular risk management
2: (2013)
Post-transcriptional regulation of Magnaporthe oryzae pathogenicity genes
3: (2015)
From hypothesis construction, through experimental execution, to result publication and citation
4: (2016)
BYOD (Bring Your Own Data Workshop series)
5: (2016)
BYOD (Bring Your Own Data Workshop series)
6: (2016)
Data FAIRness Through Existing Web Technologies.
7: (2016)
Data FAIRness Through Existing Web Technologies.
8: (2019)
Measuring FAIRness - Open Science Conference 2019
9: (2019)
Student Organized Workshop on Forces in Biomolecular Systems
7 Cursos, seminarios y tutoriales
1: (2015)
Conducting in silico research IN the Web: from hypothesis to publication
2: (2015)
Improving Scientific Reproducibility through Semantics
3: (2015)
Improving Scientific Reproducibility through Semantics
4: (2015)
Improving Scientific Reproducibility through Semantics
5: (2015)
Using the Semantic Web for faster (Bio-)Research
6: (2015)
VII JORNADA CIENTÍFICA CENTRO DE BIOTECNOLOGÍA Y GENÓMICA DE PLANTAS. UPM-INIA (CBGP) 25 de Septiembre de 2015 Sala de Seminarios del CBGP, Campus de Montegancedo UPM
7: (2016)
Advanced Bioinformatics
2 Otras Publicaciones
1: (2017)
A design framework and exemplar metrics for FAIRness
2: (2017)
FAIRMetrics/Metrics: Initial set of proposed FAIR Metrics for community discussion
19 Ponencia en Congresos
1: (2013)
Web Science Studies into Semantic Web Service-Based Research Environments
2: (2015)
Applying Bioinformatics Tools to explore the evolution of the mRNA processing machinery in the fungal kingdom
3: (2015)
Bioinformatic analysis of Magnaporthe oryzae polyadenylation sites from next generation sequencing data
4: (2015)
Diagnostic Knowledge Extraction from MedlinePlus: An Application for Infectious Diseases
5: (2015)
The relationship between host lifespan and pathogen reservoir potential: an analysis in the system Arabidopsis thaliana-Cucomber mosaic virus
6: (2016)
Alternative polyadenylation regulates plant development and response to stress
7: (2016)
Approaches to formally tracking, representing, and validating scientific argumentation
8: (2016)
Hypothesis from Nanopublications created by SADI services
9: (2017)
Boosting genotype-phenotype and translational research on rare diseases by establishing Findable, Accessible, Interoperable and Reusable data resources through data linking technologies
10: (2017)
Boosting genotype-phenotype and translational research on rare diseases by establishing Findable, Accessible, Interoperable and Reusable (FAIR) data resources through data linking technologies.
11: (2017)
Boosting health care and life science research on rare diseases by creating a robust infrastructure of independently Findable, Accessible, Interoperable, and Reusable (FAIR) biobanks, registries, and molecular data resources
12: (2017)
Bring Your Own Data workshop is an excellent tool to promote the establishment of Findable, Accessible, Interoperable, and Reusable rare disease registries
13: (2017)
Overview of a suite of middle-ware services for implementing FAIR data principles
14: (2017)
The FAIRification of Data and the Potential of FAIR Resources Demonstrated, in Practice, at the Rome Bring Your Own Data Workshop
15: (2017)
The FAIRification of data and the potentialities of FAIR resources showed, in practice, at the Rome ?Bring Your Own Data? workshop
16: (2018)
Unraveling Certainty in Bio-Scholarly Statements
17: (2019)
Condensed Microbiome representation using Transfer and Deep Learning to Promote Microbial Composition Prediction
18: (2019)
Epigenetic regulation by H3K27 methylation in Brassica rapa
19: (2019)
Modeling recovery of Crohn's disease, by simulating microbial community dynamics under perturbations
Explotación de Resultados y Transferencia de Tecnología
1 Creación de empresas
1: (2019)
FAIR Data Systems
2 Registros de Software
1: (2015)
DataFairPort: The Perl libraries version 0.231
2: (2015)
DataFairPort: The Perl libraries version 0.231
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S2i 2023 Observatorio de investigación @ UPM con la colaboración del Consejo Social UPM
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