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Descripción
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| We are manually annotating a corpus of 100 full-text experimental protocols in cell biology, neuroscience, developmental biology, microbiology and molecular biology. We are gathering the protocols from repositories like bio-protocols, Cold Spring Harbor Protocols and Nature protocols. Our annotation focuses on: the SIRO model, namely: i) the Sample tested, ii) the Instruments employed, iii) the Reagents used and, iv) the overall Objective of the protocol. The SIRO model represents the minimal information for describing an experimental protocol. Our manual annotation experience illustrates how to use annotations from domain experts in the enrichment of an ontology; we are identifying key terms in the text and relating these to concepts in the ontology. By the same token, our annotation experience is supporting our NLP infrastructure; the identi?cation of speci?c facets, S I R O, allows us to enrich our gazetteers and better tailor our JAPE rules. Our approach supports answering queries such as we support queries such as \transformation protocol (objective)", of \Saccharomyces cerevisiae (sample)" by using \lithium acetate/single-stranded carrier (reagent)". | |
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Internacional
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Si |
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Nombre congreso
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Biomedical Linked Annotation Hackathon 3 (BLAH3) |
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Tipo de participación
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960 |
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Lugar del congreso
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Tokyo, Japon |
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Revisores
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Si |
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ISBN o ISSN
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CDP08UPM |
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DOI
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Fecha inicio congreso
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16/01/2017 |
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Fecha fin congreso
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20/01/2017 |
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Desde la página
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1 |
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Hasta la página
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3 |
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Título de las actas
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http://blah3.linkedannotation.org/program |