Memorias de investigación
Research Publications in journals:
Enhanced reproducibility of SADI web service workflows with Galaxy and Docker
Year:2015

Research Areas
  • Natural sciences and health sciences,
  • Information technology and adata processing

Information
Abstract
Background: Semantic Web technologies have been widely applied in the life sciences, for example by data providers such as OpenLifeData and through web services frameworks such as SADI. The recently reported OpenLifeData2SADI project offers access to the vast OpenLifeData data store through SADI services. Findings: This article describes how to merge data retrieved from OpenLifeData2SADI with other SADI services using the Galaxy bioinformatics analysis platform, thus making this semantic data more amenable to complex analyses. This is demonstrated using a working example, which is made distributable and reproducible through a Docker image that includes SADI tools, along with the data and workflows that constitute the demonstration. Conclusions: The combination of Galaxy and Docker offers a solution for faithfully reproducing and sharing complex data retrieval and analysis workflows based on the SADI Semantic web service design patterns.
International
Si
JCR
No
Title
GigaScience
ISBN
2047-217X
Impact factor JCR
Impact info
Volume
4
10.1186/s13742-015-0092-3
Journal number
From page
1
To page
9
Month
DICIEMBRE
Ranking
indice de impacto a determinar en Junio de 2016
Participants

Research Group, Departaments and Institutes related
  • Creador: Centro o Instituto I+D+i: Centro de Biotecnología y Genómica de Plantas, CBGP